Protein ZmSBP19
ZmSBP19 is a protein in the SBP family.
Information
TF Name: ZmSBP19
Species: Maize
TF Family: SBP
Gene Name(Synonym): SBP19
Uniprot ID: A0A1D6PDQ1

Protein ZmSBP19

ZmSBP19 is a protein in the SBP family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d053772DAPseq no logo sequence fimo position
Zm00001d053772DAPseq no logo sequence fimo position
Zm00001d053772ChIPseq no logo sequence fimo position
Zm00001d053772PChIPseq no logo sequence fimo position
Zm00001d053775DAPseq no logo sequence fimo position
Zm00001d053775DAPseq no logo sequence fimo position
Zm00001d053775ChIPseq no logo sequence fimo position
Zm00001d053775PChIPseq no logo sequence fimo position

Interactions where ZmSBP19 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmSBP19 is the target  
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There are 114 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb207010_T002 from maize genome v5

Amino Acid Sequence
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MEWTAPKRAASPPSPPLLWDWGGDHAGATGSGSGSSGDAPARRGGREREAKRARADDGEVRCQVEGCGLDLSRVKEYHRK
HRVCEAHTKSPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQPDAFAFASARLPSSSFDDRRQIS
FVWNKAPVSHPFTSPWDSSSELPHAKEIREVSTKVGTITGQVHLDKSYVSNAVPSLTHGKDEPWPMKGPDMSIAASKFDG
APDLQRALSLLSVGACGLPDPVHQTSCVIQFTSASENSGDLHLSHGANSGLASCGDGQHIASQPQAQLVRFTMDTSNSVY
EPSFFSVNQIN

MEWTAPKRAASPPSPPLLWDWGGDHAGATGSGSGSSGDAPARRGGREREAKRARADDGEVRCQVEGCGLDLSRVKEYHRK
HRVCEAHTKSPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQPDAFAFASARLPSSSFDDRRQIS
FVWNKAPVSHPFTSPWDSSSELPHAKEIREVSTKVGTITGQVHLDKSYVSNAVPSLTHGKDEPWPMKGPDMSIAASKFDG
APDLQRALSLLSVGACGLPDPVHQTSCVIQFTSASENSGDLHLSHGANSGLASCGDGQHIASQPQAQLVRFTMDTSNSVY
EPSFFSVNQIN

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available

Nucleotide Sequence
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CAAATTCCGTTTCCCCCGTCTCTTC...

GRMZM2G052902_T01 from maize genome v3

Amino Acid Sequence
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MTEAARFHGMIGGGGGKGMQDNVINGFDNIPYYQKFGEGSHMSVDSVDGFNLTNCAGGSVAMSVDSSSVGSNESRTVILK
HPGLRDAPTASYSVNNSVFRPNRVAAHTLNEDALAQVLMDPNHPTEVLSSYEQWTIDLGRLDMGGPFAQGAFGSCTGEYI
MEKMLPLSCWRSLRMIQKEPIRWSSNLCKRL

Nucleotide Sequence
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ATACGCTGCGAGCCTGCCTTGTTTT...

GRMZM2G163813_T01 from maize genome v3


Related TFome: pUT3361

Amino Acid Sequence
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MEWTAPKRAASPPSPPLLWDWGGDHAGATGSGSGSSGDAPARRGGREREAKRARADDGEVRCQVEGCGLDLSRVKEYHRK
HRVCEAHTKSPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQPDAFAFASARLPSSSFDFPGRKR
RGLLRKDKSISLFPDFPSCYLHNKFSNMIGGK

Nucleotide Sequence
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GGGTAAGTATCTTAAGTTGTGTCTT...

GRMZM2G163813_T02 from maize genome v3

Amino Acid Sequence
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MEWTAPKRAASPPSPPLLWDWGGDHAGATGSGSGSSGDAPARRGGREREAKRARADDGEVRCQVEGCGLDLSRVKEYHRK
HRVCEAHTKSPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQPDAFAFASARLPSSSFDDRRQIS
FVWNKAPVSHPFTSPWDSSSELPHAKEIREVSTKVGTITGQVHLDKSYVSNAVPSLTHGKDEPWPMKGPDMSIAASKFDG
APDLQRALSLLSVGACGLPDPVHQTSCVIQFTSASENSGDLHLSHGANSGLASCGDGQHIASQPQAQLVRFTMDTSNSVY
EPSFFSVNQIN

Nucleotide Sequence
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GGGTAAGTATCTTAAGTTGTGTCTT...

GRMZM2G163813_T03 from maize genome v3

Amino Acid Sequence
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MEWTAPKRAASPPSPPLLWDWGGDHAGATGSGSGSSGDAPARRGGREREAKRARADDGEVRCQVEGCGLDLSRVKEYHRK
HRVCEAHTKSPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQPDAFAFASARLPSSSFGNVFIS

Nucleotide Sequence
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CAAAGAAAAAGTATTGGGATGCGAA...

GRMZM2G163813_T04 from maize genome v3

Amino Acid Sequence
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MKGPDMSIAASKFDGAPDLQRALSLLSVGACGLPDPVHQTSCVIQFTSASENSGDLHLSHGANSGLASCGDGQHIASQPQ
AQLVRFTMDTSNSVYEPSFFSVNQIN

Nucleotide Sequence
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CAATGAACCATGAGTAGGACCTATA...

Zm00001d053772_T001 from maize genome v4

Amino Acid Sequence
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MTEAARFHGMIGGGGGKGMQDNVINGFDNIPYYQKFGEGSHMSVDSVDGFNLTNCAGGSVAMSVDSSSVGSNESRTVILK
HPGLRDAPTASYSVNNSVFRPNRVAAHTLNEDALAQAAFAVVNKGARPVIPQDCLPSLRHIMTRCWDANPEVHPPFTEIV
CMLESAEMELLSNVRKARFRCCISEPMTTD

Nucleotide Sequence
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ATGACCGAGGCGGCGAGGTTTCATG...

Zm00001d053775_T001 from maize genome v4

Amino Acid Sequence
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MEWTAPKRAASPPSPPLLWDWGGDHAGATGSGSGSSGDAPARRGGREREAKRARADDGEVRCQVEGCGLDLSRVKEYHRK
HRVCEAHTKSPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQPDAFAFASARLPSSSFDDRRQIS
FVWNKAPVSHPFTSPWDSSSELPHAKEIREVSTKVGTITGQVHLDKSYVSNAVPSLTHGKDEPWPMKGPDMSIAASKFDG
APDLQRALSLLSVGACGLPDPVHQTSCVIQFTSASENSGDLHLSHGANSGLASCGDGQHIASQPQAQLVRFTMDTSNSVY
EPSFFSVNQIN

Nucleotide Sequence
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TTCCCCCGTCTCTTCTTCTGCACAG...

Zm00001eb207010_T001 from maize genome v5

Amino Acid Sequence
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MEWTAPKRAASPPSPPLLWDWGGDHAGATGSGSGSSGDAPARRGGREREAKRARADDGEVRCQVEGCGLDLSRVKEYHRK
HRVCEAHTKSPRVVVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLSDHNARRRKPQPDAFAFASARLPSSSFDDRRQIS
FVWNKAPVSHVRPFTSPWDSSSELPQAKEIRELSTKGGTITGQVHLDKSYVSTAIPSLTHGKDEPWPMKGPDMSIAASKF
DGAPDLQRALSLLSVGACGLPDPVHQTSCVIQFTSASENSGDLHLSHGANSGLASCGDGQHIASQPQAQLVRFTMDTSNS
VYEPSFFSVNQIN

Nucleotide Sequence
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CAAATTCCGTTTCCCCCGTCTCTTC...

Zm00001eb207020_T001 from maize genome v5

Amino Acid Sequence
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MTEAARFHGMIGGGGGKGMQDNVINGFDNIPYYQKFGEGSHMSVDSVDGFNLTNCAGGSVAMSVDSSSVGSNESRTVILK
HPGLRDAPTASYSVNNSVFRPNRVAAHTLNEDALAQVLMDPNHPTEVLSSYEQWTIDLGRLDMGGPFAQGAFGSCTGEYI
MEKMLPLSCWRSLRMIQKEPIRWSSNLCKRL

Nucleotide Sequence
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GTCTGCCGGTCTACCTATACGCTGC...

Zm00001eb207030_T001 from maize genome v5

Amino Acid Sequence
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MDFGLSSVEGFSDPVVTPVRLDRLRLAGGPLEAGCLGCQRHVVCWGDSVYLVVRVCNV

Nucleotide Sequence
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CGCCACTACTCGGAGTTCGACGCGG...

Zm00001eb207040_T001 from maize genome v5

Amino Acid Sequence
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MDFGLSSVEGFSDPVVTPVRLDRLRLAGGPLEAGCLGCQRHVVCWGDSVYLVVR

Nucleotide Sequence
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CGCCACTACTCGGAGTTCGACGCGG...


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